Atr-MIRN27a

Basic info.

• miRNA locus ID
• Atr-MIRN27a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00032  906046  906191  +

• Comments
• A member of MIRN27

• Confidence level
• 

Secondary structure and sequence

       TT  TTA       GT T                   A          C    A  ATATTTAAAT  C  TA
  TTTTT  TT   AGGATGG  G GACGTCATCTACATGGGGT TGACATCATC ACAT GA          GC AC  
  |||||  ||   |||||||  | ||||||||||||||||||| |||||||||| |||| ||          || ||   
  AAAAA  AG   TCCTACC  C CTGCAGTAGATGTACCCCA ATTGTAGTAG TGTA CT          CG TG  
AT     CC  TAA       AT -                   C          A    C  ----------  -  TG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]