Single miRNA

Atr-MIR396m

Basic info.

miRNA locus ID
Atr-MIR396m

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00090 1850478 1850619 -

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

   ACATGGAAAC      GGT           A -AA      AGGTTTAG  CTTTTTATTGGCAAATATGGAAG
             TCAAAT   GGTTTAAGGAA C   GGAGGA        GG                       
             ||||||   ||||||||||| |   ||||||        ||                       G
             AGTTTG   TCAAGTTCTTT G   CCTCTT        CG                       
TCCGAGTGGAATA      -AT           C GCA      --------  TACTTCGGTAGTCAACTCTATTT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold03501.1	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.66	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.188	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.106	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.30	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.33	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.91	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.299	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.101	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.77	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.111	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.82	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.242	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.99	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.38	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.4	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.142	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.141	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.209	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03564.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.229	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold03216.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.147	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.207	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.349	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.153	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.44	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.186	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00184.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.166	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.87	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.495	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00168.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.158	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.192	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.123	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.197	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.130	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02709.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.341	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00271.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.227	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.232	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.88	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.354	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.449	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.402	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.154	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00360.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02831.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.444	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.312	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.177	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.290	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.309	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.180	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.323	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.5	5	NA	NA