Single miRNA

Atr-MIR396j

Basic info.

miRNA locus ID
Atr-MIR396j

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00021 4942932 4943057 +

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

A T    ----    G       C       -           T  T  C   -  ATTG     AT
 A GATT    GTCT CATGTTT TCCACAG CTTTCTTGAAC TG TA TCA AC    CCTCT  
 | ||||    |||| ||||||| ||||||| ||||||||||| || || ||| ||    |||||   
 T CTAA    CAGA GTACGAA AGGTGTC GAAAGAACTTG AC AT AGT TG    GGAGA  
  T    ACTC    A       -       C           T  C  A   C  CCCG     AG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold03501.1	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.66	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.153	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.2	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.175	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.30	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.37	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.19	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.38	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.169	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.40	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.17	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.68	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.349	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.77	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.62	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.51	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.186	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.190	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.121	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00184.25	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.30	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.229	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold03564.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.136	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.23	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.100	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.299	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.227	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.197	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.341	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.86	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.169	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.399	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.200	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.255	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.198	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.402	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01134.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.354	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.81	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.186	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.246	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.163	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.262	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.161	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.161	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.105	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.315	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00178.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.430	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.388	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.388	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.137	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.495	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.105	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.284	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.290	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.373	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.170	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.236	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.238	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.154	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.402	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00180.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.177	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.176	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.383	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.399	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.399	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.307	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.222	5	NA	NA