Single miRNA

Atr-MIR393a

Basic info.

miRNA locus ID
Atr-MIR393a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00009 6768992 6769100 +

Comments
A member of MIR393

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 G      -G          A    A            T       TTCAGT  AA
  GTTGCA  AGGGTGGAGA ATCC AAGGGATCGCAT GATCCTT      GC  
  ||||||  |||||||||| |||| |||||||||||| |||||||      ||  G
  TAACGT  TTCTACCTCT TAGG TTCTCTGGCGTA CTAGGAA      TG  
AA      AA          G    A            -       -CCTTT  GC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00016.85	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.6	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.118	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.30	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.222	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.108	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00498.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.123	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.301	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.50	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.160	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.217	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.159	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.80	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.184	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.159	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.166	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.34	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.267	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.321	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.200	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.230	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.394	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.426	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.232	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.260	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.243	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.245	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.181	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.193	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.74	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00190.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00163.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.383	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.241	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.335	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.211	5	NA	NA