Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJEB5543 RNAseq data from 5 accessions of Coffea arabica (and one diploid accession) were generated and used to investigate genetic changes in allopolyploid Lashermes et al., 2016
1
Library Title Platform Total Base VCF File
ERR440229 RNA-Seq of Coffea eugenioides: Young leaf stage plant with Young leaf tissues, SAMEA2377379 ILLUMINA 2431515675 bp
PRJEB7565 This study explores how hybridization in Coffea hybrids reshapes gene expression regulation, uncovering the interplay between divergent genomes and regulatory networks using RNA-seq technology. Combes et al., 2015
29
Library Title Platform Total Base VCF File
ERR668776 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668777 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668778 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668779 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668780 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668781 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 400000000 bp
ERR668782 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111510 ILLUMINA 184622900 bp
ERR668783 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668784 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668785 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668786 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668787 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668788 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 400000000 bp
ERR668789 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111511 ILLUMINA 67541100 bp
ERR668790 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668791 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668792 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668793 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668794 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668795 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668796 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668797 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 400000000 bp
ERR668798 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111512 ILLUMINA 210123400 bp
ERR668799 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 400000000 bp
ERR668800 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 400000000 bp
ERR668801 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 400000000 bp
ERR668802 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 400000000 bp
ERR668803 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 400000000 bp
ERR668804 RNA-Seq of Coffea eugenioides: fully expanded leaves from Colombia: Chinchina\, Naranjal experimental station, SAMEA3111513 ILLUMINA 25301800 bp
PRJNA273321 RNAseq data generated from mRNA libraries -
2
Library Title Platform Total Base VCF File
SRR1768422 RNA-Seq of Coffea eugenioides: young leaf and mature fruit stage plant with leaf and fruit from Brazil: Mandaguari, IAPAR0304 ILLUMINA 368836400 bp
SRR1768445 RNA-Seq of Coffea eugenioides: young leaf and mature fruit stage plant with leaf and fruit from Brazil: Mandaguari, IAPAR0304 ILLUMINA 474704900 bp

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